U-Compare Species Disambiguation Service

6 Last view: 2020-10-16

U-Compare Species Disambiguation Service

http://nactem001.mib.man.ac.uk:8080/UCompareWebServices/Species_Disambiguation

Web service created by exporting UIMA-based workflow from the U-Compare text mining system.
Functionality: Identifies biological named entities and disambiguates them according to
species, by assigning a species ID from the NCBI taxonomy. Also identifies sentences and tokens.
Tools in workflow: GENIA Sentence Splitter, GENIA Tagger (with tokenisation), Species Word Detector, ExtractAbbrev, Species Disambiguator (all from the University of Manchester)
NOTE: The licence provided covers the web service only. Tools used to create the workflow may have their own licences

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DistributionAvailability

Available - Restricted Use

Licence

Proprietary

Restrictions: Academic - Non Commercial Use, Attribution

User Nature: Academic

Download location: hidden

Distribution Access/Medium: Accessible Through Interface, Web Executable

Execution location: hidden

Attribution Details: The U-Compare Species Diambiguation service is provided and hosted by the National Centre for Text Mining, School of Computer Science, University of Manchester

Licensors:

University of Manchester

Distribution rights holders:

University of Manchester

IPR Holder

University of Manchester

Contact Person

Sophia Ananiadou

toolService

Service

Language Dependent

Input

Media type: Text

Resource type: Corpus

Modality: Written Language

Language: English

Character encoding: UTF - 8

Output

Media type: Text

Resource type: Corpus

Modality: Written Language

Language: English

Character encoding: UTF - 8

Annotation type: Semantic Annotation, Semantic Annotation - Entity Mentions, Semantic Annotation - Named Entities, Structural Annotation

Annotation format: XML

Segmentation level: Sentence, Word Group

Operation

Operating system: Os - Independent

Metadata

Created: 02/01/2013

Last Updated: 02/15/2013

Metadata Creator

Paul Thompson

Usage

Foreseen UseNlp Applications

Use NLP Specific: Named Entity Recognition, Text Mining, Web Services

Documentation

Document Type: Other

Paul Thompson, U-Compare Species Disambiguation Service , http://www.nactem.ac...

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